PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_60A56C455.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 270aa    MW: 29341.3 Da    PI: 10.2114
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_60A56C455.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.3e-3054154190
                            EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                            f+k+ tpsdv+k++rlv+pk++ae+h                   +++ l + d  g+ W+++++y+++s++yvltkGW++Fvk++gL
  Traes_1BL_60A56C455.1  54 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaagaavP---GecKGVLLNFDDAAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 138
                            89***************************8888776652...144889**************************************** PP

                            -TT-EEEEEE-SSSEE CS
                     B3  75 kegDfvvFkldgrsef 90 
                             +gD vvF+++ + + 
  Traes_1BL_60A56C455.1 139 HAGDAVVFYRSASGNN 154
                            *********7655444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4046169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-3051162IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-2752149No hitNo description
PROSITE profilePS5086313.54954164IPR003340B3 DNA binding domain
SMARTSM010194.8E-2054164IPR003340B3 DNA binding domain
PfamPF023623.4E-2754157IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLRKHTYPDE LAQHKRAYFA AAAASSHTSS SLPPASSPSS PAAPSPAARR EHLFDKTVTP  60
SDVGKLNRLV IPKQHAEKHF PLQLPAAGAA VPGECKGVLL NFDDAAGKLW RFRYSYWNSS  120
QSYVLTKGWS RFVKEKGLHA GDAVVFYRSA SGNNQLFIDC KLRSKTTTTT TAFVNVAAAA  180
PSPAPVTRTV RLFGVDLLTA PAPEHEEYGM AKTNKRSMDA SVEAPTPAHA VWKKRCVDFA  240
LTYRLATAPE FPRSRDQLEG VQAAGSTFAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-505116411118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719410.0AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141742.12e-95putative AP2/EREBP transcription factor superfamily protein
SwissprotQ8RZX98e-92Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLW5A2G50.0W5A2G5_WHEAT; Uncharacterized protein
STRINGMLOC_38822.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.28e-57related to ABI3/VP1 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]